publications

Home / publications

Bibliography


Chromatin topology and distal elements underlie divergent cell-type-specific regulation of 9p21 locus cell cycle genes.

Cell Genomics | 2026

Torlai Triglia E, Miller TE, Durand NC, Kim KL, Casaní-Galdón S, D’Antonio J, Javed N, Paz Hernandez A, Raman A, Cruz AJ, Issner R, Choudhary A, Aguet F, Verga J, Chan M, Ramanathan V, Li CM, Hecht V, Hansen AS, Aryee MJ, Epstein CB, Kelley DR, Najm FJ, Shoresh N, Ardlie K, Hendrickson DG, Ruby JG, Bernstein BE, Gaskell E.


Synergistic targeting of eIF4A-mediated translation initiation and apoptosis in acute myeloid leukemia

Blood Neoplasia | 2026

Lee YS, Good JD, Awais N, Eschle BK, Lineberry MS, Lin J, Wunderlich M, Thibodeau J, Edwards H, Teo JL, Bibeau S, Wollman M, Karadimov G, Sariipek N, Salik B, Acosta J, Noel J, Cucchi DGJ, DePasquale EAK, Gokhale PC, Ritz J, Ge Y, Miller PG, Najm FJ, Stone RM, Garcia JS, Lane AA, Jones CL, van Galen P


Multi-locus CRISPRi targeting with a single truncated guide RNA

Nature Communications | 2025

Molly M Moore, Siddarth Wekhande, Robbyn Issner, Alejandro Collins, Anna J Cruz, Yanjing Liu, Nauman Javed, Salvador Casaní-Galdón, Jason D Buenrostro, Charles B Epstein, Eugenio Mattei, John G Doench, Bradley E Bernstein, Noam Shoresh, Fadi J Najm


Impact of supraphysiologic MDM2 expression on chromatin networks and therapeutic responses in sarcoma

Cell Genomics | 2023

Samantha M Bevill, Salvador Casaní-Galdón, Chadi A El Farran, Eli G Cytrynbaum, Kevin A Macias, Sylvie E Oldeman, Kayla J Oliveira, Molly M. Moore, Esmat Hegazi, Carmen Adriaens, Fadi J Najm, George D Demetri, Sonia Cohen, John T Mullen, Nicolò Riggi, Sarah E Johnstone, Bradley E Bernstein


Integrative dissection of gene regulatory elements at base resolution

Cell Genomics | 2023

Zeyu Chen, Nauman Javed, Molly Moore, Jingyi Wu, Gary Sun, Michael Vinyard, Alejandro Collins, Luca Pinello, Fadi J Najm*, Bradley E Bernstein*


Chromatin complex dependencies reveal targeting opportunities in leukemia

Nature Communications | 2023

Fadi J Najm, Peter DeWeirdt, Molly M Moore, Samantha M Bevill, Chadi A El Farran, Kevin A Macias, Mudra Hegde, Amanda L Waterbury, Brian B Liau, Peter van Galen, John G Doench Bradley E Bernstein


Long-range phasing of dynamic, tissue-specific and allele-specific regulatory elements

Nature Genetics | 2022

Sofia Battaglia, Kevin Dong, Jingyi Wu, Zeyu Chen, Fadi J Najm, Yuanyuan Zhang, Molly M Moore, Vivian Hecht, Noam Shoresh, Bradley E Bernstein


Renewing your HBO1 subscription

Blood | 2022

Fadi J Najm and Peter van Galen


Cell type-specific intralocus interactions reveal oligodendrocyte mechanisms in MS

Cell | 2020

Daniel C Factor, Anna M Barbeau, Kevin C Allan, Lucille R Hu, Mayur Madhavan, An T Hoang, Kathryn EA Hazel, Parker A Hall, Sagar Nisraiyya, Fadi J Najm, Tyler E Miller, Zachary S Nevin, Robert T Karl, Bruna R Lima, Yanwei Song, Alexandra G Sibert, Gursimran K Dhillon, Christina Volsko, Cynthia F Bartels, Drew J Adams, Ranjan Dutta, Michael D Gallagher, William Phu, Alexey Kozlenkov, Stella Dracheva, Peter C Scacheri, Paul J Tesar, Olivia Corradin


Diverse Chemical Scaffolds Enhance Oligodendrocyte Formation by Inhibiting CYP51, TM7SF2, or EBP

Cell Chemical Biology | 2019

Dharmaraja Allimuthu, Zita Hubler, Fadi J Najm, Hong Tang, Ilya Bederman, William Seibel, Paul J Tesar, Drew J Adams


Orthologous CRISPR–Cas9 enzymes for combinatorial genetic screens

Nature Biotechnology | 2017

Fadi J Najm, Christine Strand, Katherine F Donovan, Mudra Hegde, Kendall R Sanson, Emma W Vaimberg, Meagan E Sullender, Ella Hartenian, Zohra Kalani, Nicolo Fusi, Jennifer Listgarten, Scott T Younger, Bradley E Bernstein, David E Root, John G Doench


Adaptive chromatin remodeling drives glioblastoma stem cell plasticity and drug tolerance

Cell Stem Cell | 2017

Brian B Liau, Cem Sievers, Laura K Donohue, Shawn M Gillespie, William A Flavahan, Tyler E Miller, Andrew S Venteicher, Christine H Hebert, Christopher D Carey, Scott J Rodig, Sarah J Shareef, Fadi J Najm, Peter van Galen, Hiroaki Wakimoto, Daniel P Cahill, Jeremy N Rich, Jon C Aster, Mario L Suvà, Anoop P Patel, Bradley E Bernstein


Reprogramming of Mouse Fibroblasts to Induced Oligodendrocyte Progenitor Cells

Stem Cell Technologies in Neuroscience | 2017

Robert T Karl, Angela M Lager, Fadi J Najm, Paul J Tesar


Drug-based modulation of endogenous stem cells promotes functional remyelination in vivo

Nature | 2015

Fadi J Najm, Mayur Madhavan, Anita Zaremba, Elizabeth Shick, Robert T Karl, Daniel C Factor, Tyler E Miller, Zachary S Nevin, Christopher Kantor, Alex Sargent, Kevin L Quick, Daniela M Schlatzer, Hong Tang, Ruben Papoian, Kyle R Brimacombe, Min Shen, Matthew B Boxer, Ajit Jadhav, Andrew P Robinson, Joseph R Podojil, Stephen D Miller, Robert H Miller, Paul J Tesar


Transcription factor-mediated reprogramming of fibroblasts to expandable, myelinogenic oligodendrocyte progenitor cells

Nature Biotechnology | 2013

Fadi J Najm, Angela M Lager, Anita Zaremba, Krysta Wyatt, Andrew V Caprariello, Daniel C Factor, Robert T Karl, Tadao Maeda, Robert H Miller, Paul J Tesar


Generation and characterization of epiblast stem cells from blastocyst-stage mouse embryos

Epiblast Stem Cells: Methods and Protocols | 2013

Daniel C Factor, Fadi J Najm, Paul J Tesar


Rapid and robust generation of functional oligodendrocyte progenitor cells from epiblast stem cells

Nature Methods | 2011

Fadi J Najm, Anita Zaremba, Andrew V Caprariello, Shreya Nayak, Eric C Freundt, Peter C Scacheri, Robert H Miller, Paul J Tesar


Isolation of epiblast stem cells from preimplantation mouse embryos

Cell Stem Cell | 2011

Fadi J Najm, Josh G Chenoweth, Philip D Anderson, Joseph H Nadeau, Raymond W Redline, Ronald DG McKay, Paul J Tesar